Neuroscience Discovery Research, Lilly Research Laboratories,
Indianapolis, Indiana (M.I.S., S.C.H., C.M.C., P.S.); Department of
Pharmacology and Toxicology, Indiana University School of Medicine,
Indianapolis, Indiana (C.M.C., P.S.); and Department of Chemistry,
University of Wisconsin-Milwaukee, Milwaukee, Wisconsin (J.M.C.)
Imidazobenzodiazepines such as RY-80 have been reported to exhibit both
high affinity and selectivity for GABAA receptors containing an
5 subunit. A single amino acid residue
(
5Ile215) has been identified that plays a critical role
in the high-affinity, subtype-selective effects of RY-80 and
structurally related ligands. Thus, substitution of
5Ile215 with the cognate amino acid contained in the
1 subunit (Val211) reduced the selectivity of RY-80 for
5
3
2 receptors from ~135-
to ~8-fold compared with
1
3
2 receptors. This
mutation produced a comparable reduction in the selectivity of RY-24 (a
structural analog of RY-80) for
5
3
2 receptors but did not
markedly alter the affinities of ligands (e.g., flunitrazepam) that are
not subtype-selective. Conversely, substitution of the
1
subunit with the cognate amino acid contained in the
5
subunit (i.e.,
1V211I) increased the affinities of
5-selective ligands by a ~20-fold and reduced by
3-fold the affinity of an
1-selective agonist
(zolpidem). Increasing the lipophilicity (e.g., by substitution of Phe)
of
5215 did not significantly affect the affinities (and selectivities) of RY-80 and RY-24 for
5-containing
GABAA receptors. However, the effect of introducing
hydrophilic and or charged residues (e.g., Lys, Asp, Thr) at this
position was no greater than that produced by the
5I215V
mutation. These data indicate that residue
5215 may not
participate in formation of the lipophilic L2 pocket that
has been proposed to contribute to the unique pharmacological properties of
5-containing GABAA receptors.
RY-80 and RY-24 acted as inverse agonists in both wild-type
5
3
2 and mutant
5I215K
3
2 receptors
expressed in Xenopus laevis oocytes. However, both RY-24 and RY-80 acted as antagonists at mutant
5I215V
3
2 and
5I215T
3
2 receptors,
whereas the efficacy of flunitrazepam was similar at all three receptor
isoforms. The data demonstrate that amino acid residue
5215 is a determinant of both ligand affinity and
efficacy at GABAA receptors containing an
5 subunit.
 |
Introduction |
The principal
therapeutic actions of drugs such as
the benzodiazepines (e.g., diazepam), imidazopyridines (e.g.,
zolpidem), and triazolopyridazines (e.g., zaleplon) are effected
through the family of GABAA receptors
(Lüddens et al., 1995
; Korpi et al., 1997
; Sigel and Buhr, 1997
).
Based on sequence homology, 17 distinct subunits belonging to six
related families (
1-6,
1-3,
1-3,
,
,
1-2,
) have been identified as members of
this group of ligand-gated ion channels (for review, see McKernan and
Whiting, 1996
; Sigel and Buhr, 1997
; Bonnert et al., 1999
). Assuming a
pentameric arrangement (Nayeem et al., 1994
), there is a remarkable
potential for GABAA receptor heterogeneity. Nonetheless, no more than 10 to 20 distinct GABAA
receptor isoforms have been identified in the adult rat central nervous
system (Fritschy and Mohler, 1995
; De Blas, 1996
; McKernan and Whiting,
1996
), with the majority existing as heteromers composed of
-,
-,
and
-subunits (Fritschy and Mohler, 1995
; De Blas, 1996
). Although the stoichiometry of native GABAA receptors has
not been definitively established, several studies have proposed a
GABAA receptor configuration as consisting of
2
-, 2
-, and 1
-subunit (Chang et al., 1996
; Tretter et al.,
1997
).
Studies using recombinant GABAA receptors have
demonstrated that subunit composition defines ligand pharmacology at
these ligand-gated ion channels (Pritchett and Seeburg, 1990
; Hadingham et al., 1993
). This principle is amply illustrated by the impact of the
-subunit on the affinities of a chemically diverse group of
substances often termed benzodiazepine site ligands (for review, see
Lüddens et al., 1995
; Korpi et al., 1997
). For example,
prototypic 1,4- benzodiazepines such as diazepam and flunitrazepam
possess high (nM) affinities for GABAA receptors
containing
1,2,3 and
5 subunits [comprising the
"diazepam-sensitive" (DS) family of GABAA
receptors], but are essentially inactive at receptors containing
4 and
6 subunits
[the "diazepam-insensitive" family of GABAA receptors] (Korpi et al., 1992
; Wong et al., 1992
; Wieland and Lüddens, 1994
; Fritschy and Mohler, 1995
). This remarkable effect on ligand affinity is determined in a large part, by a single histidine
residue in homologous positions
1101,
2101,
3126, and
5105 of the DS
-subunits and the cognate
arginine in position 100 on the
4 and
6 receptors (Wieland et al., 1992
; Benson et al., 1998
).
The affinities of 1,4-benzodiazepines are very similar among both
recombinant and native DS receptors (Mohler et al., 1978
; Pritchett and
Seeburg, 1990
; Graham et al., 1996
). Several nonbenzodiazepine molecules, including CL 218,872 and zolpidem, exhibit some selectivity for recombinant GABAA receptors bearing an
1 subunit and possess higher affinities in
brain regions (e.g., cerebellum) that are relatively enriched in this
species (Squires et al., 1979
; Pritchett and Seeburg, 1990
; Hadingham
et al., 1993
). Only recently have very high-affinity, selective
compounds been developed for less abundant GABAA
receptor isoforms. Thus, based on the ~10-fold selectivity of Ro
15-4513 for GABAA receptors containing an
5 subunits (Hadingham et al., 1993
;
Lüddens et al., 1994
), compounds such as RY-80, RY-24, and
L-655,708 have been developed (Liu et al., 1995
, 1996
; Quirk et al.,
1996
). These imidazodiazepine derivatives exhibit high affinity and
selectivity for wild-type and recombinant GABAA
receptors containing an
5 subunit (Liu et al.,
1995
, 1996
; Skolnick et al., 1997
; Sur et al., 1998
, 1999
). Using these
compounds as probes, we now identify a single amino acid residue on the
5 subunit (Ile215) that is critical for ligand
selectivity at recombinant
5
3
2 receptors.
 |
Materials and Methods |
Transfection of Recombinant GABAA Receptors and
Membrane Preparation.
cDNAs encoding rat
1 and
5 subunits were
subcloned into a pRc/CMV vector, as described elsewhere (Skolnick et
al., 1997
). The
3 and
2S cDNAs were subcloned into pcDNA3 (Gunnersen
et al., 1996
). Site-directed mutagenesis was performed with QuickChange mutagenesis kit (Stratagene, La Jolla, CA). Presence of the desired mutations was verified by direct sequencing. To verify the absence of
new, unwanted substitutions, the complete coding regions were sequenced
for each mutant. In case of
5I215F mutant, the
plasmid resulting from the QuickChange mutagenesis reaction was
digested with PflMI endonuclease, and the fragment containing the
desired I215F substitution was gel-purified and ligated into the
similarly digested wild-type pRc/CMV/a5 vector. Human embryonic kidney
293 cells (American Type Culture Collection, Manassas, VA) were
maintained at 37°C in 5% CO2 as previously
described (Gunnersen et al., 1996
). Cells were transfected with equal
amounts (5 µg of each DNA/90-mm dish) by calcium phosphate
precipitation as described previously (Gorman et al., 1990
). The cells
were harvested 48 h after transfection, by washing with ice-cold
phosphate-buffered saline and centrifuged at 1000g. Cells
were washed three times by homogenization in ice-cold 50 mM
Tris-citrate buffer, pH 7.8, and centrifuged at 20000g. These membrane suspensions were stored at
70°C until needed.
Radioligand Binding.
Incubations were performed in a final
volume of 600 to 1000 µl and contained resuspended cell membranes
(~0.02-0.1 mg of protein), 0.2 M NaCl,
[3H]Ro 15-1788, or
[3H]RY-80 (87 and 55.4 Ci/mmol, respectively;
DuPont-New England Nuclear, Boston, MA), and 50 mM Tris-citrate buffer,
pH 7.8, to volume. In competition experiments, 50 µl of buffer was
replaced by drugs. [3H]Ro 15-1788 was used at
concentrations equal to its KD values at
the respective receptor subtype. Nonspecific binding was determined with Ro 15-1788 (10 µM). [3H]Muscimol binding
was determined using a membrane suspension (~0.02-0.1 mg of
protein), [3H]muscimol (20 Ci/mmol; DuPont-New
England Nuclear), and 50 mM Tris-citrate buffer, pH 7.8, to volume.
Nonspecific binding in this case was determined in presence of 1 mM
GABA. Assays were incubated at 4°C for 2 h and terminated by
rapid filtration (Brandel M-48R, Gaithersburg, MD) through GF/B filters
followed by two 5-ml washes with ice-cold Tris-citrate buffer. The
filter-retained radioactivity was determined by liquid scintillation
counting. Data were analyzed with GraphPad Prism software (GraphPad
Software Inc., San Diego, CA), and Ki
values were calculated from the equation, Ki = IC50/(1 + [radioligand]/KD). Both
Ki and KD
values were calculated from at least three independent experiments
performed in duplicate. Statistical significance was determined using a
one-way ANOVA followed by a Dunnett's multiple comparison post hoc
test. Protein concentrations were determined using the bicinchoninic
acid protein assay kit (Pierce, Rockford, IL). RY-24 and RY-80 were
synthesized at the University of Wisconsin-Milwaukee, CL 218,872 was
obtained from Lederle Laboratories (Mont-St-Guibert, Belgium), and
zolpidem was obtained from Synthelabo (Laboratoire Experimental
Recherche Synthelabo, Paris, France). Flunitrazepam was purchased from
Research Biochemicals International (Natick, MA). The structures of Ro 15-1788 and related
5-selective
benzodiazepines are given in Fig. 1. All
other reagents and chemicals were from standard commercial sources.

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Fig. 1.
Structures of imidazobenzodiazepines with selectivity
for 5-containing GABAA receptors: Comparison
with Ro 15-1788.
|
|
Expression in Xenopus laevis Oocytes.
X. laevis frogs were purchased from Xenopus-1 (Dexter, MI).
Collagenase B was from Boehringer Mannheim (Indianapolis, IN). All
other compounds were from Sigma Chemical Co. Capped cRNA was synthesized from linearized template cDNA encoding the subunits using
mMESSAGE mMACHINE kits (Ambion, Austin, TX). Oocytes were injected with
cRNAs encoding the specified
5 subunit
variants along with the
3 and
2 subunits in a ratio of 1:1:1 as determined by gel electrophoresis. Mature X. laevis frogs were
anesthetized by submersion in 0.1% 3-aminobenzoic acid ethyl ester,
and oocytes were surgically removed. Follicle cells were removed by
treatment with collagenase B for 2 h. Each oocyte was injected
with 5 to 25 ng of cRNA in 50 nl of water and incubated at 19°C in
modified Barth's saline (88 mM NaCl, 1 mM KCl, 2.4 mM
NaHCO3, 0.41 mM CaCl2, 0.82 mM MgSO4, 100 µg/ml gentamicin, and 15 mM
HEPES, pH 7.6). Recordings were performed 1 to 7 days post injection.
Electrophysiological Recordings
Oocytes were
perfused at room temperature in a Warner Instruments oocyte recording
chamber #RC-5/18 (Hamden, CT) with perfusion solution (115 mM NaCl, 1.8 mM CaCl2, 2.5 mM KCl, 10 mM HEPES, pH 7.2). Perfusion
solution was gravity fed continuously at a rate of 15 ml/min. GABA was
dissolved in the perfusion solution. Drugs were added as a 10 mM
solution in ethanol to the perfusion solution to achieve the
appropriate concentration.
Unless otherwise indicated, current responses to GABA application were
measured under two-electrode voltage clamp at a holding potential of
60 mV. Data were collected using a GeneClamp 500 amplifier and
Axoscope software (Axon Instruments, Foster City, CA). GABA responses
were measured at concentrations of GABA equal to its
EC50 values for all receptors tested. GABA
responses in the presence of saturating concentrations of drugs are
reported as a percentage of the response to GABA alone ("percent
control response", or "% control"). Data were fitted to a
four-parameter logistic using GraphPad Prizm. Statistical significance
was determined using a one-way ANOVA followed by a Bonferroni's
multiple comparison post hoc test.
 |
Results |
Amino Acid Ile215 on the
5 Subunit Contributes to
Ligand Selectivity at
5
3
2
Receptors.
In an attempt to define amino acid residues on the
5 subunit that are important for high affinity
and selectivity to compounds such as RY-80, we considered amino acid
residues that are conserved among all other DS
-subunits (Fig.
2). Based on this sequence comparison,
four residues in the
5 subunit N-terminal
domain were selected for the initial analysis as the most likely to be involved in defining ligand selectivity. The corresponding amino acids
on the other DS
-subunits were substituted on the
5 subunit, yielding
5G24R,
5P166T,
5H196D, and
5I215V
variants, respectively. Wild-type and mutant
5
3
2
receptors were transiently expressed in the human embryonic kidney 293 cells. No additional mutations were found after sequencing the complete
coding regions for each mutant. The screening strategy applied to
identify amino acid(s) important for ligand selectivity at
5 subunit was based on the premise that at the
concentrations approximating the KD value of each ligand the binding of [3H]Ro 15-1788 and [3H]RY-80 to the wild-type
5
3
2
receptor will be similar, yielding a ratio of ~1. If a particular
amino acid substitution introduced in the
5
subunit altered [3H]RY-80 binding, this ratio
would change. Among the amino acid substitutions tested, only
5I215V yielded a dramatically different ratio
(17.8) than the value obtained (1.04) in wild-type
5
3
2 receptors (data not shown). Based on this observation, the mutant receptor
5I215V
3
2
was chosen for further analysis. Saturation analysis revealed a
~16-fold decrease in affinity for [3H]RY-80
in
5I215V
3
2
receptor (5.6 ± 0.6 nM) compared with wild-type receptor
(0.35 ± 0.02 nM) (Fig. 3A).
Consistent with these data, the affinities of the
5-selective compounds RY-80 and RY-24 in mutant receptors were reduced ~20- and ~10-fold, respectively, in
competition studies using [3H]Ro 15-1788 (Fig.
3B; Table 1). In contrast, the affinity
of the nonselective ligand [3H]Ro 15-1788 was
not significantly affected by this mutation (Table 1; Fig. 3B).

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Fig. 2.
Alignment of the rat GABAA
1, 2, 3, and
5 subunits. The sequences shown represent N-terminal
regions of the corresponding -subunits up to the first putative
transmembrane domain (TM1). Arrows: amino acids chosen for
mutagenesis.
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Fig. 3.
Reduced affinities of 5-selective
ligands at 5I215V 3 2
receptor. A, binding of [3H]RY-80 to wild-type
5 3 2 ( ) and
5I215V 3 2 ( ) receptors.
These are representative isotherms with KD
values for [3H]RY-80 of 0.38 nM
(Bmax = 1008 fmol/mg of protein) and
6.5 nM (Bmax = 2419 fmol/mg of protein)
for the 5 3 2 and
5I215V 3 2 receptors,
respectively. Because of differences in receptor density and/or
transfection efficiency, the quantity of bound [3H]RY-80
was normalized to the estimated Bmax values.
KD and Bmax
values were calculated by nonlinear least-squares fit of specifically
bound [3H]RY-80 (under Materials and
Methods). B, displacement of [3H]Ro 15-1788 binding with RY-24 from wild-type
5 3 2 ( ) and
5I215V 3 2 ( ) receptors.
[3H]Ro 15-1788 was used at concentrations equal to its
KD value for each receptor.
Ki values were calculated using the equation
of Cheng and Prusoff (under Materials and Methods).
Ki values for RY-24 were equal to 0.71 and
4.6 nM for 5 3 2 and
5I215V 3 2 receptors,
respectively. Representative curves are shown. Also shown are
representative [3H]Ro 15-1788 saturation isotherms for
wild-type 5 3 2 ( ) and
5I215V 3 2 ( ) receptors.
KD values for [3H]Ro 15-1788 were 0.34 and 0.57 nM in wild-type and mutant receptors, respectively.
The data from [3H]Ro 15-1788 saturation isotherms were
transformed as (1 B/Bmax) × 100% for ease of comparison.
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TABLE 1
Binding properties of the wild-type and mutant
1 3 2 and
5 3 2 receptors
KD values for [3H]Ro 15-1788 and
[3H]RY-80 were determined in saturation experiments.
Ki values were derived from the displacement of
[3H]Ro 15-1788 at a concentration equivalent to its
KD value at each receptor subtype. Values are
mean ± S.E.M. for at least three experiments performed in
duplicate.
|
|
Properties of
1V211I
3
2
Receptor.
The dramatic effect produced by substitution of a valine
in position
5215 on the affinities of the
5-selective ligands prompted an examination of
the effect of a cognate substitution (isoleucine for valine) on
position
1211 (corresponding to
5215). Consistent with the previous reports
(Liu et al., 1996
) both RY-24 and RY-80 exhibited low affinities
(56 ± 17 and 47 ± 8 nM, respectively) for wild-type
1
3
2
receptors (Table 1). This exchange
(
1V211I
3
2) increased the affinities of RY-24 and RY-80 by more than one order of
magnitude (to 3.3 ± 0.3 and 3.7 ± 0.3 nM, respectively)
(Table 1). Moreover, this mutation decreased the affinities of the
1-selective ligands zolpidem and CL 218,872 by
3-fold without affecting the affinity of [3H]Ro
15-1788 (Table 1; Fig. 3).
Properties of Mutant
5
3
2 Receptors with
Lipophilic Amino Acid Substitutions in Position
5215.
Based on the hypothesis that interaction with
a lipophilic pocket is required for ligand selectivity at the
5-containing GABAA
receptors (Liu et al., 1996
), isoleucine in position 215 of the
wild-type
5 subunit was exchanged with
alanine, leucine, or phenylalanine. The ligand binding properties of
the
5I215A
3
2 receptor were similar to those of the
5I215V
receptor. The alanine
substitution decreased (by >10-fold) the affinities of both RY-24 and
RY-80 without altering the affinity of [3H]Ro
15-1788. In contrast to the valine substitution, introduction of
alanine in position
5215 increased the
affinity of CL 218,872 by 10-fold (Table 1). Substitution of either
leucine or the more lipophilic phenylalanine resulted in no significant
change in the affinities of RY-24 and RY-80. Furthermore, substitution
5I215F resulted in a slightly reduced affinity
of Ro 15-1788 and a lower affinity of CL 218,872. The affinity of
flunitrazepam was unchanged (compared with wild-type receptors) for
both
5I215A
3
2
and
5I215L
3
2 receptors (Ki values of 0.6 ± 0.1 and
0.9 ± 0.2 nM, respectively), whereas the affinity for
flunitrazepam at the
5I215F
3
2
receptors was decreased ~7-fold (Ki = 6.9 ± 1.8 nM). A decrease in the affinity of
5-selective ligands at
5I215A
3
2
and
5I215V
3
2
receptors prompted us to further reduce the size of the side chain of
the residue
5215. However, introduction of
glycine resulted in levels of [3H]Ro 15-1788, [3H]RY-80, or
[3H]muscimol binding that were barely detectable.
Properties of Mutant
5
3
2 Receptors with Charged
or Polar Amino Acid Residues in Position
5215.
Substitution of the negatively charged aspartate residue at position
215 produced a modest decrease in affinity of
[3H]Ro 15-1788 (1.7 ± 0.3 nM compared
with 0.36 ± 0.04 nM for the wild-type receptor), and a similar,
modest decrease in the affinities of RY-80 and RY-24 binding (Table 1).
Substitution of a threonine (a more hydrophilic amino acid) for
isoleucine yielded a receptor with properties similar to
5I215V
3
2
receptor. This receptor produced a 10-fold decrease in affinities of
both RY-24 and RY-80 without significantly affecting
[3H]Ro 15-1788 binding. However,
isoleucine-to-threonine substitution resulted in a small (3-fold)
increase in the affinity of flunitrazepam (Table 1). Substitution of a
basic lysine residue for isoleucine produced a 5- to 6-fold decrease in
the affinities of both RY-24 and RY-80 without affecting the affinity
of [3H]Ro 15-1788. The affinity of
flunitrazepam also was not substantially changed (Table 1).
Additionally,
5I215D
3
2,
5I215T
3
2,
and
5I215K
3
2
receptors displayed an increase in affinity of CL 218,872 (4-fold)
compared with wild-type receptors; however, none of the amino acid
substitutions in position
5215 yielded a
receptor variant with any measurable affinity for zolpidem.
Efficacy of RY-24 and RY-80 at Wild-Type and Mutant
5
3
2 Receptors.
Mutation of a conserved histidine residue in the N-terminal domain of
all DS
-subunits (
1H101R,
2H101R,
3H126R, and
5H105R) to arginine not only confers diazepam
insensitivity to the respective
x
2/3
2
receptors but also alters the efficacies of several ligands at these
receptors (Benson et al., 1998
). Based on these observations, the
potential role of
5215 in modulating ligand
efficacy was examined. Three mutant receptors,
5I215V
3
2,
5I215K
3
2,
and
5I215T
3
2
were examined. Introduction of either valine, lysine, or threonine in
position
5215 did not change the potency of
GABA at these receptor subtypes (EC50 = ~30
µM for all receptors tested; see Table
2, legend).
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TABLE 2
Mutation of residue 5215 changes efficacy of
benzodiazepine-site ligands
Wild-type or mutant GABAA receptors were expressed in X. laevis
oocytes and electrophysiological recordings were performed as described
under Materials and Methods. Responses to concentrations of
GABA in presence of drugs are reported as a percentage of the response
to GABA alone (% control). GABA was applied at concentration 30 µM,
approximating its EC50 value at each receptor subtype tested
(EC50 = 25.8 ± 7.8 µM). RY-80, RY-24, and flunitrazepam
were used at a saturating concentration of 1 µM. Values are
means ± S.D. for at least three oocytes.
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The benzodiazepine flunitrazepam potentiated GABA-mediated currents in
wild-type
5
3
2
receptors as well as the
5I215V
3
2,
5I215K
3
2,
and
5I215T
3
2,
mutants (Table 2). Consistent with previous results, RY-24 and RY-80
act as inverse agonists at
5
3
2 receptors (Liu et al., 1995
, 1996
; Skolnick et al., 1997
), producing a
maximum reduction in GABA-evoked currents to 75 ± 2 and 70 ± 6% of the control response, respectively, when GABA was applied at
its EC50 value (Table 2). A similar reduction of
the GABA-evoked currents was produced by RY-24 and RY-80 at
5I215K
3
2
receptors (72 ± 4 and 62 ± 4% of control response,
respectively). In contrast, neither RY-24 nor RY-80 affected GABA
currents on either
5I215V
3
2 or
5I215T
3
2
receptors at concentrations of up to 1 µM, sufficient to saturate receptors.
 |
Discussion |
The objective of the present study was to localize the molecular
features of the
5 subunit responsible for the
high affinity and selectivity of ligands such as RY-80. Because the
N-terminal extracellular domain exhibits the greatest sequence
divergence among
-subunits, it was hypothesized that this region was
most likely to be involved in defining ligand selectivity. Four amino acid residues conserved in this region among the
1-3 subunits but different in the
5 subunit (
5G24,
5P166,
5H195, and
5I215) were considered. Substitution of each
of these four residues in the
5 subunit with
the corresponding amino acids conserved among the
1-3 subunits resulted in a significant
reduction in [3H]RY-80 binding only in the
5I215V
3
2
mutant (under Results). Saturation analysis confirmed that
this reduction in [3H]RY-80 binding reflects an
~16-fold increase in the KD value of this
radioligand (Table 1; Fig. 3) compared with wild-type
5I215V
3
2
receptors. This mutation concomitantly reduced the selectivity of RY-80
for GABAA receptors containing an
5 subunit from ~134- to ~8.4-fold compared
with cognate receptors containing an
1
subunit. This mutation also increased the
Ki of RY-24 by >6.0-fold and reduced its
selectivity for
5-containing
GABAA receptors from ~80- to ~12-fold (Table
1; Fig. 3). Because all known
5-selective
ligands are structurally related (Fig. 1), it is not known whether the
affinities of other, structurally unrelated compounds exhibiting
5-subtype selectivity would be similarly
affected. However, the observation that the affinity of Ro 15-1788 was
not significantly altered in the
5I215V
3
2 mutant and that the affinity of CL 218,872 was slightly increased supports the hypothesis that this amino acid is essential for a
selective interaction at
5
3
2
receptors. We hypothesized that if Ile215 is essential for ligand
selectivity at
5
3
2
receptors, then substitution of this residue at this corresponding
position in
1
3
2
receptors (i.e., at Val211) should produce a significant increase in the affinity of compounds such as RY-80.
Consistent with this hypothesis, the affinities of both RY-80 and RY-24
were increased ~20-fold in
1V211I
3
2,
whereas the affinities of other ligands were either unchanged or
slightly reduced (Fig. 4).

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Fig. 4.
Increased affinities of 5-selective
ligands at 1V211I 3 2
receptor. A, binding of [3H] RY-80 to wild-type
1 3 2 ( ) and
1V211I 3 2 ( ) receptors.
These are representative isotherms with KD
values for [3H] RY-80 of 48.4 nM
(Bmax = 353 fmol/mg of protein) and 2.3 nM (Bmax = 1453 fmol/mg of protein) for
the 1 3 2 and
1V211I 3 2 receptors,
respectively. Because of differences in receptor density and/or
transfection efficiency the quantity of bound [3H]RY-80
was normalized to the estimated Bmax values.
KD and Bmax
values were calculated by nonlinear least-squares fit of specifically
bound [3H]RY-80 (under Materials and
Methods). B, displacement of [3H]Ro 15-1788 binding with RY-24 from wild-type
1 3 2 ( ) and
1V211I 3 2 ( ) receptors.
[3H]Ro 15-1788 was used at concentrations equal to its
KD value at each receptor.
Ki values were calculated using the equation
of Cheng and Prusoff (under Materials and Methods).
Ki values for RY-24 were equal to 55.9 and
3.3 nM for 1 3 2 and
1V211I 3 2 receptors,
respectively. Representative curves are shown. Also shown are
representative [3H]Ro 15-1788 saturation isotherms for
wild-type 1 3 2 ( ) and
1V211I 3 2 ( ) receptors.
KD values for [3H]Ro 15-1788 were 1.2 and 0.82 nM in wild-type and mutant receptors, respectively.
The data from [3H]Ro 15-1788 saturation isotherms were
transformed as (1 B/Bmax) × 100% for ease of comparison.
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Based on the affinities of a structurally diverse group of ligands, an
inclusive pharmacophore of the
5
2
2
receptor has been developed (Liu et al., 1996
). A large lipophilic
regionl (L2) appears to contribute to the unique
pharmacological properties of this GABAA receptor
isoform (Liu et al., 1996
). Thus, although the L2
descriptor is common to the pharmacophore of other
GABAA receptors (e.g.,
1
2
2
receptors), the larger volume of L2 in
5
2
2
receptors has been proposed to result in low affinities for ligands
(e.g., zolipidem) that do not extend into this domain, and very high
affinities for compounds (e.g., RY-80) capable of filling this area
(Liu et al., 1996
). Both the >10-fold reduction in the affinities of
5-selective ligands produced by a subtle change in the lipophilicity of residue 215 (i.e., isoleucine-to-valine) and the corresponding increases in affinity produced by the cognate (i.e., "back") mutation in
1
3
2
receptors prompted us to hypothesize that Ile215 constitutes a portion
of this L2 domain. If this hypothesis is correct,
then increasing the lipophilicity of the residue at
5215 should increase the affinities of ligands
such as RY-80 and RY-24 without remarkably affecting the affinities of
nonselective ligands. Conversely, reducing lipophilicity, either by
substituting a nonpolar amino acid with a smaller side chain or
introduction of polar or charged residues at
5215 should produce a further reduction in the
affinities of these compounds. Increasing the lipophilicity of this
residue (e.g., leucine, phenylalanine) did not remarkably affect the
affinities of RY-80 and RY-24. In contrast, 5- to 6-fold decreases in
affinities of nonspecific ligands Ro 15-1788 and flunitrazepam were
observed (Table 1). However, neither reducing lipophilicity by
introducing an alanine residue nor substitution of polar and/or charged
residues (e.g., threonine, lysine, and aspartic acid) decreased the
affinities of the
5-selective ligands beyond
that produced by the original
5I215V mutation
(Table 1). These observations indicate that although contributing to
the high affinity and selectivity of RY-80 and RY-24 at
5
3
2
receptors, residue 215 may not directly participate in the formation of
L2. Thus, the original model, based on an
L2 lipophilic region exerting influence over
ligand selectivity at
5-containing
GABAA receptors merits reconsideration.
Furthermore, in the absence of crystallographic studies of ligand-bound
receptor (Dingledine et al., 1999
), it is possible that
5215 modulates the affinities of RY-24 and
RY-80 through an allosteric mechanism rather than as an integral part of the binding pocket.
Although the present findings demonstrate that
5Ile215 substantially contributes to ligand
selectivity at
5
3
2
receptors, it cannot be the sole determinant of the unique
pharmacological profile of this receptor isoform. Thus, RY-80 and RY-24
retain modest selectivities (~8-14-fold) for
5I215V,
5I215A, and
5I215T
3
2 receptors compared with
1
3
2
receptors. Moreover, despite a ~20-fold increase in the affinities of
RY-80 and RY-24 for
1
3
2 receptors containing a back mutation (i.e.,
1V211I
3
2),
these compounds remain significantly (~5-fold) more potent in
wild-type
5
3
2
receptors. Finally, the very low affinity of zolpidem at wild-type
5-containing receptors is maintained through a
range of mutations at this residue. Other likely candidates
contributing to the pharmacological profile of
5
3
2
receptors (i.e., selectivity for RY-80 and RY-24) are one or more of
the other N terminus amino acid residues that differ between the
5 and
1-3 subunits, as well as residues on the
-subunit that may act in concert with
5I215 to produce a unique pharmacology. This
latter hypothesis is consistent with both the dramatic reduction in the
affinity of zolpidem produced by substitution of a
3 for a
2 subunit in
recombinant
1-containing
GABAA receptors (Lüddens et al., 1994
), and
the absolute requirement for a
-subunit for high-affinity binding of
benzodiazepine-site ligands (Pritchett et al., 1989
; Wong et al., 1992
;
Boileau et al., 1998
).
The
-subunit has been closely linked to the efficacy of
benzodiazepine-site ligands (Knoflach et al., 1991
; Puia et al., 1991
).
Nonetheless, a series of conservative mutations
(
1H101R,
2H101R,
3H126R, and
5H105R)
that imparts diazepam insensitivity to the corresponding
x
2/3
2
receptors (Wieland et al., 1992
; Benson et al., 1998
) were recently
shown to affect the efficacy of several benzodiazepine-site ligands
(Benson et al., 1998
). This finding prompted us to examine the role of
5215 in controlling ligand efficacy at
recombinant
5
3
2
receptors. Three mutations (
5I215V,
5I215T, and
5I215K)
were chosen for study based on their structural divergence from the
residue present in wild-type receptors and the reduced affinities of
5-selective agents. Introduction of valine,
lysine, or threonine in position
5215 does not
affect the potency of GABA compared with wild-type receptors. These
mutations did not alter the ability of flunitrazepam to act as an
agonist, increasing currents evoked by subsaturating concentrations of GABA (Fig. 5; Table 2). In contrast, the
characteristic ability of RY-80 and RY-24 to reduce GABA-gated currents
in wild-type
5
3
2
receptors (Fig. 5; Table 2; Liu et al., 1996
)) was abolished in
5I215V
3
2
and
5I215T
3
2
receptors, but retained in the
5I215K
3
2
mutants. The failure to observe a change in the efficacies of RY-24 and
RY-80 in the
5I215K mutants indicates this
effect on ligand efficacy is independent of changes in ligand affinity because all three mutations reduced (albeit to different degrees) the
affinities of these
5-selective ligands. These
data demonstrate that in addition to a well described role in defining
the affinities of benzodiazepine-site ligands, the
-subunit can also
impact ligand efficacy. The identification of amino acid residues
contributing to ligand selectivity at GABAA
receptor isoforms may provide insights resulting in compounds with a
more limited spectrum of action than traditional 1,4-benzodiazepines.

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Fig. 5.
Representative voltage-clamp trace recordings from
X. laevis oocytes injected with the wild-type or mutant
5 3 2 constructs
5 3 2 (left),
5I215V 3 2 (center), and
5I215K 3 2 (right). GABA (30 µM) was perfused over oocyte for the duration indicated by the black
bar. GABA plus saturating concentrations of compound (1 µM) were
perfused over oocyte for the duration indicated by the gray bar.
Oocytes were voltage-clamped at 60 mV. Scale bars, 50 nA/10 s. Note
that flunitrazepam potentiates currents at all receptor subtypes
tested, whereas RY-80 changes its mode of action from being an inverse
agonist at the wild-type
5 3 2 and mutant
5I215K 3 2 receptors to
being an antagonist at the
5I215V 3 2 receptor.
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