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Vol. 58, Issue 6, 1434-1440, December 2000


A Single Amino Acid Residue on the alpha 5 Subunit (Ile215) Is Essential for Ligand Selectivity at alpha 5beta 3gamma 2 gamma -Aminobutyric AcidA Receptors

Marina I. Strakhova,1 Scott C. Harvey, Christine M. Cook, James M. Cook, and Phil Skolnick

Neuroscience Discovery Research, Lilly Research Laboratories, Indianapolis, Indiana (M.I.S., S.C.H., C.M.C., P.S.); Department of Pharmacology and Toxicology, Indiana University School of Medicine, Indianapolis, Indiana (C.M.C., P.S.); and Department of Chemistry, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin (J.M.C.)

    Abstract
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References

Imidazobenzodiazepines such as RY-80 have been reported to exhibit both high affinity and selectivity for GABAA receptors containing an alpha 5 subunit. A single amino acid residue (alpha 5Ile215) has been identified that plays a critical role in the high-affinity, subtype-selective effects of RY-80 and structurally related ligands. Thus, substitution of alpha 5Ile215 with the cognate amino acid contained in the alpha 1 subunit (Val211) reduced the selectivity of RY-80 for alpha 5beta 3gamma 2 receptors from ~135- to ~8-fold compared with alpha 1beta 3gamma 2 receptors. This mutation produced a comparable reduction in the selectivity of RY-24 (a structural analog of RY-80) for alpha 5beta 3gamma 2 receptors but did not markedly alter the affinities of ligands (e.g., flunitrazepam) that are not subtype-selective. Conversely, substitution of the alpha 1 subunit with the cognate amino acid contained in the alpha 5 subunit (i.e., alpha 1V211I) increased the affinities of alpha 5-selective ligands by a ~20-fold and reduced by 3-fold the affinity of an alpha 1-selective agonist (zolpidem). Increasing the lipophilicity (e.g., by substitution of Phe) of alpha 5215 did not significantly affect the affinities (and selectivities) of RY-80 and RY-24 for alpha 5-containing GABAA receptors. However, the effect of introducing hydrophilic and or charged residues (e.g., Lys, Asp, Thr) at this position was no greater than that produced by the alpha 5I215V mutation. These data indicate that residue alpha 5215 may not participate in formation of the lipophilic L2 pocket that has been proposed to contribute to the unique pharmacological properties of alpha 5-containing GABAA receptors. RY-80 and RY-24 acted as inverse agonists in both wild-type alpha 5beta 3gamma 2 and mutant alpha 5I215Kbeta 3gamma 2 receptors expressed in Xenopus laevis oocytes. However, both RY-24 and RY-80 acted as antagonists at mutant alpha 5I215Vbeta 3gamma 2 and alpha 5I215Tbeta 3gamma 2 receptors, whereas the efficacy of flunitrazepam was similar at all three receptor isoforms. The data demonstrate that amino acid residue alpha 5215 is a determinant of both ligand affinity and efficacy at GABAA receptors containing an alpha 5 subunit.

    Introduction
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References

The principal therapeutic actions of drugs such as the benzodiazepines (e.g., diazepam), imidazopyridines (e.g., zolpidem), and triazolopyridazines (e.g., zaleplon) are effected through the family of GABAA receptors (Lüddens et al., 1995; Korpi et al., 1997; Sigel and Buhr, 1997). Based on sequence homology, 17 distinct subunits belonging to six related families (alpha 1-6, beta 1-3, gamma 1-3, delta , epsilon , rho 1-2, theta ) have been identified as members of this group of ligand-gated ion channels (for review, see McKernan and Whiting, 1996; Sigel and Buhr, 1997; Bonnert et al., 1999). Assuming a pentameric arrangement (Nayeem et al., 1994), there is a remarkable potential for GABAA receptor heterogeneity. Nonetheless, no more than 10 to 20 distinct GABAA receptor isoforms have been identified in the adult rat central nervous system (Fritschy and Mohler, 1995; De Blas, 1996; McKernan and Whiting, 1996), with the majority existing as heteromers composed of alpha -, beta -, and gamma -subunits (Fritschy and Mohler, 1995; De Blas, 1996). Although the stoichiometry of native GABAA receptors has not been definitively established, several studies have proposed a GABAA receptor configuration as consisting of 2alpha -, 2beta -, and 1gamma -subunit (Chang et al., 1996; Tretter et al., 1997).

Studies using recombinant GABAA receptors have demonstrated that subunit composition defines ligand pharmacology at these ligand-gated ion channels (Pritchett and Seeburg, 1990; Hadingham et al., 1993). This principle is amply illustrated by the impact of the alpha -subunit on the affinities of a chemically diverse group of substances often termed benzodiazepine site ligands (for review, see Lüddens et al., 1995; Korpi et al., 1997). For example, prototypic 1,4- benzodiazepines such as diazepam and flunitrazepam possess high (nM) affinities for GABAA receptors containing alpha 1,2,3 and alpha 5 subunits [comprising the "diazepam-sensitive" (DS) family of GABAA receptors], but are essentially inactive at receptors containing alpha 4 and alpha 6 subunits [the "diazepam-insensitive" family of GABAA receptors] (Korpi et al., 1992; Wong et al., 1992; Wieland and Lüddens, 1994; Fritschy and Mohler, 1995). This remarkable effect on ligand affinity is determined in a large part, by a single histidine residue in homologous positions alpha 1101, alpha 2101, alpha 3126, and alpha 5105 of the DS alpha -subunits and the cognate arginine in position 100 on the alpha 4 and alpha 6 receptors (Wieland et al., 1992; Benson et al., 1998).

The affinities of 1,4-benzodiazepines are very similar among both recombinant and native DS receptors (Mohler et al., 1978; Pritchett and Seeburg, 1990; Graham et al., 1996). Several nonbenzodiazepine molecules, including CL 218,872 and zolpidem, exhibit some selectivity for recombinant GABAA receptors bearing an alpha 1 subunit and possess higher affinities in brain regions (e.g., cerebellum) that are relatively enriched in this species (Squires et al., 1979; Pritchett and Seeburg, 1990; Hadingham et al., 1993). Only recently have very high-affinity, selective compounds been developed for less abundant GABAA receptor isoforms. Thus, based on the ~10-fold selectivity of Ro 15-4513 for GABAA receptors containing an alpha 5 subunits (Hadingham et al., 1993; Lüddens et al., 1994), compounds such as RY-80, RY-24, and L-655,708 have been developed (Liu et al., 1995, 1996; Quirk et al., 1996). These imidazodiazepine derivatives exhibit high affinity and selectivity for wild-type and recombinant GABAA receptors containing an alpha 5 subunit (Liu et al., 1995, 1996; Skolnick et al., 1997; Sur et al., 1998, 1999). Using these compounds as probes, we now identify a single amino acid residue on the alpha 5 subunit (Ile215) that is critical for ligand selectivity at recombinant alpha 5beta 3gamma 2 receptors.

    Materials and Methods
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References

Transfection of Recombinant GABAA Receptors and Membrane Preparation. cDNAs encoding rat alpha 1 and alpha 5 subunits were subcloned into a pRc/CMV vector, as described elsewhere (Skolnick et al., 1997). The beta 3 and gamma 2S cDNAs were subcloned into pcDNA3 (Gunnersen et al., 1996). Site-directed mutagenesis was performed with QuickChange mutagenesis kit (Stratagene, La Jolla, CA). Presence of the desired mutations was verified by direct sequencing. To verify the absence of new, unwanted substitutions, the complete coding regions were sequenced for each mutant. In case of alpha 5I215F mutant, the plasmid resulting from the QuickChange mutagenesis reaction was digested with PflMI endonuclease, and the fragment containing the desired I215F substitution was gel-purified and ligated into the similarly digested wild-type pRc/CMV/a5 vector. Human embryonic kidney 293 cells (American Type Culture Collection, Manassas, VA) were maintained at 37°C in 5% CO2 as previously described (Gunnersen et al., 1996). Cells were transfected with equal amounts (5 µg of each DNA/90-mm dish) by calcium phosphate precipitation as described previously (Gorman et al., 1990). The cells were harvested 48 h after transfection, by washing with ice-cold phosphate-buffered saline and centrifuged at 1000g. Cells were washed three times by homogenization in ice-cold 50 mM Tris-citrate buffer, pH 7.8, and centrifuged at 20000g. These membrane suspensions were stored at -70°C until needed.

Radioligand Binding. Incubations were performed in a final volume of 600 to 1000 µl and contained resuspended cell membranes (~0.02-0.1 mg of protein), 0.2 M NaCl, [3H]Ro 15-1788, or [3H]RY-80 (87 and 55.4 Ci/mmol, respectively; DuPont-New England Nuclear, Boston, MA), and 50 mM Tris-citrate buffer, pH 7.8, to volume. In competition experiments, 50 µl of buffer was replaced by drugs. [3H]Ro 15-1788 was used at concentrations equal to its KD values at the respective receptor subtype. Nonspecific binding was determined with Ro 15-1788 (10 µM). [3H]Muscimol binding was determined using a membrane suspension (~0.02-0.1 mg of protein), [3H]muscimol (20 Ci/mmol; DuPont-New England Nuclear), and 50 mM Tris-citrate buffer, pH 7.8, to volume. Nonspecific binding in this case was determined in presence of 1 mM GABA. Assays were incubated at 4°C for 2 h and terminated by rapid filtration (Brandel M-48R, Gaithersburg, MD) through GF/B filters followed by two 5-ml washes with ice-cold Tris-citrate buffer. The filter-retained radioactivity was determined by liquid scintillation counting. Data were analyzed with GraphPad Prism software (GraphPad Software Inc., San Diego, CA), and Ki values were calculated from the equation, Ki = IC50/(1 + [radioligand]/KD). Both Ki and KD values were calculated from at least three independent experiments performed in duplicate. Statistical significance was determined using a one-way ANOVA followed by a Dunnett's multiple comparison post hoc test. Protein concentrations were determined using the bicinchoninic acid protein assay kit (Pierce, Rockford, IL). RY-24 and RY-80 were synthesized at the University of Wisconsin-Milwaukee, CL 218,872 was obtained from Lederle Laboratories (Mont-St-Guibert, Belgium), and zolpidem was obtained from Synthelabo (Laboratoire Experimental Recherche Synthelabo, Paris, France). Flunitrazepam was purchased from Research Biochemicals International (Natick, MA). The structures of Ro 15-1788 and related alpha 5-selective benzodiazepines are given in Fig. 1. All other reagents and chemicals were from standard commercial sources.


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Fig. 1.   Structures of imidazobenzodiazepines with selectivity for alpha 5-containing GABAA receptors: Comparison with Ro 15-1788.

Expression in Xenopus laevis Oocytes. X. laevis frogs were purchased from Xenopus-1 (Dexter, MI). Collagenase B was from Boehringer Mannheim (Indianapolis, IN). All other compounds were from Sigma Chemical Co. Capped cRNA was synthesized from linearized template cDNA encoding the subunits using mMESSAGE mMACHINE kits (Ambion, Austin, TX). Oocytes were injected with cRNAs encoding the specified alpha 5 subunit variants along with the beta 3 and gamma 2 subunits in a ratio of 1:1:1 as determined by gel electrophoresis. Mature X. laevis frogs were anesthetized by submersion in 0.1% 3-aminobenzoic acid ethyl ester, and oocytes were surgically removed. Follicle cells were removed by treatment with collagenase B for 2 h. Each oocyte was injected with 5 to 25 ng of cRNA in 50 nl of water and incubated at 19°C in modified Barth's saline (88 mM NaCl, 1 mM KCl, 2.4 mM NaHCO3, 0.41 mM CaCl2, 0.82 mM MgSO4, 100 µg/ml gentamicin, and 15 mM HEPES, pH 7.6). Recordings were performed 1 to 7 days post injection.

Electrophysiological Recordings Oocytes were perfused at room temperature in a Warner Instruments oocyte recording chamber #RC-5/18 (Hamden, CT) with perfusion solution (115 mM NaCl, 1.8 mM CaCl2, 2.5 mM KCl, 10 mM HEPES, pH 7.2). Perfusion solution was gravity fed continuously at a rate of 15 ml/min. GABA was dissolved in the perfusion solution. Drugs were added as a 10 mM solution in ethanol to the perfusion solution to achieve the appropriate concentration.

Unless otherwise indicated, current responses to GABA application were measured under two-electrode voltage clamp at a holding potential of -60 mV. Data were collected using a GeneClamp 500 amplifier and Axoscope software (Axon Instruments, Foster City, CA). GABA responses were measured at concentrations of GABA equal to its EC50 values for all receptors tested. GABA responses in the presence of saturating concentrations of drugs are reported as a percentage of the response to GABA alone ("percent control response", or "% control"). Data were fitted to a four-parameter logistic using GraphPad Prizm. Statistical significance was determined using a one-way ANOVA followed by a Bonferroni's multiple comparison post hoc test.

    Results
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References

Amino Acid Ile215 on the alpha 5 Subunit Contributes to Ligand Selectivity at alpha 5beta 3gamma 2 Receptors. In an attempt to define amino acid residues on the alpha 5 subunit that are important for high affinity and selectivity to compounds such as RY-80, we considered amino acid residues that are conserved among all other DS alpha -subunits (Fig. 2). Based on this sequence comparison, four residues in the alpha 5 subunit N-terminal domain were selected for the initial analysis as the most likely to be involved in defining ligand selectivity. The corresponding amino acids on the other DS alpha -subunits were substituted on the alpha 5 subunit, yielding alpha 5G24R, alpha 5P166T, alpha 5H196D, and alpha 5I215V variants, respectively. Wild-type and mutant alpha 5beta 3gamma 2 receptors were transiently expressed in the human embryonic kidney 293 cells. No additional mutations were found after sequencing the complete coding regions for each mutant. The screening strategy applied to identify amino acid(s) important for ligand selectivity at alpha 5 subunit was based on the premise that at the concentrations approximating the KD value of each ligand the binding of [3H]Ro 15-1788 and [3H]RY-80 to the wild-type alpha 5beta 3gamma 2 receptor will be similar, yielding a ratio of ~1. If a particular amino acid substitution introduced in the alpha 5 subunit altered [3H]RY-80 binding, this ratio would change. Among the amino acid substitutions tested, only alpha 5I215V yielded a dramatically different ratio (17.8) than the value obtained (1.04) in wild-type alpha 5beta 3gamma 2 receptors (data not shown). Based on this observation, the mutant receptor alpha 5I215Vbeta 3gamma 2 was chosen for further analysis. Saturation analysis revealed a ~16-fold decrease in affinity for [3H]RY-80 in alpha 5I215Vbeta 3gamma 2 receptor (5.6 ± 0.6 nM) compared with wild-type receptor (0.35 ± 0.02 nM) (Fig. 3A). Consistent with these data, the affinities of the alpha 5-selective compounds RY-80 and RY-24 in mutant receptors were reduced ~20- and ~10-fold, respectively, in competition studies using [3H]Ro 15-1788 (Fig. 3B; Table 1). In contrast, the affinity of the nonselective ligand [3H]Ro 15-1788 was not significantly affected by this mutation (Table 1; Fig. 3B).


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Fig. 2.   Alignment of the rat GABAA alpha 1, alpha 2, alpha 3, and alpha 5 subunits. The sequences shown represent N-terminal regions of the corresponding alpha -subunits up to the first putative transmembrane domain (TM1). Arrows: amino acids chosen for mutagenesis.


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Fig. 3.   Reduced affinities of alpha 5-selective ligands at alpha 5I215Vbeta 3gamma 2 receptor. A, binding of [3H]RY-80 to wild-type alpha 5beta 3gamma 2 () and alpha 5I215Vbeta 3gamma 2 (open circle ) receptors. These are representative isotherms with KD values for [3H]RY-80 of 0.38 nM (Bmax = 1008 fmol/mg of protein) and 6.5 nM (Bmax = 2419 fmol/mg of protein) for the alpha 5beta 3gamma 2 and alpha 5I215Vbeta 3gamma 2 receptors, respectively. Because of differences in receptor density and/or transfection efficiency, the quantity of bound [3H]RY-80 was normalized to the estimated Bmax values. KD and Bmax values were calculated by nonlinear least-squares fit of specifically bound [3H]RY-80 (under Materials and Methods). B, displacement of [3H]Ro 15-1788 binding with RY-24 from wild-type alpha 5beta 3gamma 2 () and alpha 5I215Vbeta 3gamma 2 (open circle ) receptors. [3H]Ro 15-1788 was used at concentrations equal to its KD value for each receptor. Ki values were calculated using the equation of Cheng and Prusoff (under Materials and Methods). Ki values for RY-24 were equal to 0.71 and 4.6 nM for alpha 5beta 3gamma 2 and alpha 5I215Vbeta 3gamma 2 receptors, respectively. Representative curves are shown. Also shown are representative [3H]Ro 15-1788 saturation isotherms for wild-type alpha 5beta 3gamma 2 (black-triangle) and alpha 5I215Vbeta 3gamma 2 (triangle ) receptors. KD values for [3H]Ro 15-1788 were 0.34 and 0.57 nM in wild-type and mutant receptors, respectively. The data from [3H]Ro 15-1788 saturation isotherms were transformed as (1 - B/Bmax) × 100% for ease of comparison.


                              
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TABLE 1
Binding properties of the wild-type and mutant alpha 1beta 3gamma 2 and alpha 5beta 3gamma 2 receptors

KD values for [3H]Ro 15-1788 and [3H]RY-80 were determined in saturation experiments. Ki values were derived from the displacement of [3H]Ro 15-1788 at a concentration equivalent to its KD value at each receptor subtype. Values are mean ± S.E.M. for at least three experiments performed in duplicate.

Properties of alpha 1V211Ibeta 3gamma 2 Receptor. The dramatic effect produced by substitution of a valine in position alpha 5215 on the affinities of the alpha 5-selective ligands prompted an examination of the effect of a cognate substitution (isoleucine for valine) on position alpha 1211 (corresponding to alpha 5215). Consistent with the previous reports (Liu et al., 1996) both RY-24 and RY-80 exhibited low affinities (56 ± 17 and 47 ± 8 nM, respectively) for wild-type alpha 1beta 3gamma 2 receptors (Table 1). This exchange (alpha 1V211Ibeta 3gamma 2) increased the affinities of RY-24 and RY-80 by more than one order of magnitude (to 3.3 ± 0.3 and 3.7 ± 0.3 nM, respectively) (Table 1). Moreover, this mutation decreased the affinities of the alpha 1-selective ligands zolpidem and CL 218,872 by 3-fold without affecting the affinity of [3H]Ro 15-1788 (Table 1; Fig. 3).

Properties of Mutant alpha 5beta 3gamma 2 Receptors with Lipophilic Amino Acid Substitutions in Position alpha 5215. Based on the hypothesis that interaction with a lipophilic pocket is required for ligand selectivity at the alpha 5-containing GABAA receptors (Liu et al., 1996), isoleucine in position 215 of the wild-type alpha 5 subunit was exchanged with alanine, leucine, or phenylalanine. The ligand binding properties of the alpha 5I215Abeta 3gamma 2 receptor were similar to those of the alpha 5I215Vbeta gamma receptor. The alanine substitution decreased (by >10-fold) the affinities of both RY-24 and RY-80 without altering the affinity of [3H]Ro 15-1788. In contrast to the valine substitution, introduction of alanine in position alpha 5215 increased the affinity of CL 218,872 by 10-fold (Table 1). Substitution of either leucine or the more lipophilic phenylalanine resulted in no significant change in the affinities of RY-24 and RY-80. Furthermore, substitution alpha 5I215F resulted in a slightly reduced affinity of Ro 15-1788 and a lower affinity of CL 218,872. The affinity of flunitrazepam was unchanged (compared with wild-type receptors) for both alpha 5I215Abeta 3gamma 2 and alpha 5I215Lbeta 3gamma 2 receptors (Ki values of 0.6 ± 0.1 and 0.9 ± 0.2 nM, respectively), whereas the affinity for flunitrazepam at the alpha 5I215Fbeta 3gamma 2 receptors was decreased ~7-fold (Ki = 6.9 ± 1.8 nM). A decrease in the affinity of alpha 5-selective ligands at alpha 5I215Abeta 3gamma 2 and alpha 5I215Vbeta 3gamma 2 receptors prompted us to further reduce the size of the side chain of the residue alpha 5215. However, introduction of glycine resulted in levels of [3H]Ro 15-1788, [3H]RY-80, or [3H]muscimol binding that were barely detectable.

Properties of Mutant alpha 5beta 3gamma 2 Receptors with Charged or Polar Amino Acid Residues in Position alpha 5215. Substitution of the negatively charged aspartate residue at position 215 produced a modest decrease in affinity of [3H]Ro 15-1788 (1.7 ± 0.3 nM compared with 0.36 ± 0.04 nM for the wild-type receptor), and a similar, modest decrease in the affinities of RY-80 and RY-24 binding (Table 1). Substitution of a threonine (a more hydrophilic amino acid) for isoleucine yielded a receptor with properties similar to alpha 5I215Vbeta 3gamma 2 receptor. This receptor produced a 10-fold decrease in affinities of both RY-24 and RY-80 without significantly affecting [3H]Ro 15-1788 binding. However, isoleucine-to-threonine substitution resulted in a small (3-fold) increase in the affinity of flunitrazepam (Table 1). Substitution of a basic lysine residue for isoleucine produced a 5- to 6-fold decrease in the affinities of both RY-24 and RY-80 without affecting the affinity of [3H]Ro 15-1788. The affinity of flunitrazepam also was not substantially changed (Table 1). Additionally, alpha 5I215Dbeta 3gamma 2, alpha 5I215Tbeta 3gamma 2, and alpha 5I215Kbeta 3gamma 2 receptors displayed an increase in affinity of CL 218,872 (4-fold) compared with wild-type receptors; however, none of the amino acid substitutions in position alpha 5215 yielded a receptor variant with any measurable affinity for zolpidem.

Efficacy of RY-24 and RY-80 at Wild-Type and Mutant alpha 5beta 3gamma 2 Receptors. Mutation of a conserved histidine residue in the N-terminal domain of all DS alpha -subunits (alpha 1H101R, alpha 2H101R, alpha 3H126R, and alpha 5H105R) to arginine not only confers diazepam insensitivity to the respective alpha xbeta 2/3gamma 2 receptors but also alters the efficacies of several ligands at these receptors (Benson et al., 1998). Based on these observations, the potential role of alpha 5215 in modulating ligand efficacy was examined. Three mutant receptors, alpha 5I215Vbeta 3gamma 2, alpha 5I215Kbeta 3gamma 2, and alpha 5I215Tbeta 3gamma 2 were examined. Introduction of either valine, lysine, or threonine in position alpha 5215 did not change the potency of GABA at these receptor subtypes (EC50 = ~30 µM for all receptors tested; see Table 2, legend).


                              
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TABLE 2
Mutation of residue alpha 5215 changes efficacy of benzodiazepine-site ligands

Wild-type or mutant GABAA receptors were expressed in X. laevis oocytes and electrophysiological recordings were performed as described under Materials and Methods. Responses to concentrations of GABA in presence of drugs are reported as a percentage of the response to GABA alone (% control). GABA was applied at concentration 30 µM, approximating its EC50 value at each receptor subtype tested (EC50 = 25.8 ± 7.8 µM). RY-80, RY-24, and flunitrazepam were used at a saturating concentration of 1 µM. Values are means ± S.D. for at least three oocytes.

The benzodiazepine flunitrazepam potentiated GABA-mediated currents in wild-type alpha 5beta 3gamma 2 receptors as well as the alpha 5I215Vbeta 3gamma 2, alpha 5I215Kbeta 3gamma 2, and alpha 5I215Tbeta 3gamma 2, mutants (Table 2). Consistent with previous results, RY-24 and RY-80 act as inverse agonists at alpha 5beta 3gamma 2 receptors (Liu et al., 1995, 1996; Skolnick et al., 1997), producing a maximum reduction in GABA-evoked currents to 75 ± 2 and 70 ± 6% of the control response, respectively, when GABA was applied at its EC50 value (Table 2). A similar reduction of the GABA-evoked currents was produced by RY-24 and RY-80 at alpha 5I215Kbeta 3gamma 2 receptors (72 ± 4 and 62 ± 4% of control response, respectively). In contrast, neither RY-24 nor RY-80 affected GABA currents on either alpha 5I215Vbeta 3gamma 2 or alpha 5I215Tbeta 3gamma 2 receptors at concentrations of up to 1 µM, sufficient to saturate receptors.

    Discussion
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References

The objective of the present study was to localize the molecular features of the alpha 5 subunit responsible for the high affinity and selectivity of ligands such as RY-80. Because the N-terminal extracellular domain exhibits the greatest sequence divergence among alpha -subunits, it was hypothesized that this region was most likely to be involved in defining ligand selectivity. Four amino acid residues conserved in this region among the alpha 1-3 subunits but different in the alpha 5 subunit (alpha 5G24, alpha 5P166, alpha 5H195, and alpha 5I215) were considered. Substitution of each of these four residues in the alpha 5 subunit with the corresponding amino acids conserved among the alpha 1-3 subunits resulted in a significant reduction in [3H]RY-80 binding only in the alpha 5I215Vbeta 3gamma 2 mutant (under Results). Saturation analysis confirmed that this reduction in [3H]RY-80 binding reflects an ~16-fold increase in the KD value of this radioligand (Table 1; Fig. 3) compared with wild-type alpha 5I215Vbeta 3gamma 2 receptors. This mutation concomitantly reduced the selectivity of RY-80 for GABAA receptors containing an alpha 5 subunit from ~134- to ~8.4-fold compared with cognate receptors containing an alpha 1 subunit. This mutation also increased the Ki of RY-24 by >6.0-fold and reduced its selectivity for alpha 5-containing GABAA receptors from ~80- to ~12-fold (Table 1; Fig. 3). Because all known alpha 5-selective ligands are structurally related (Fig. 1), it is not known whether the affinities of other, structurally unrelated compounds exhibiting alpha 5-subtype selectivity would be similarly affected. However, the observation that the affinity of Ro 15-1788 was not significantly altered in the alpha 5I215Vbeta 3gamma 2 mutant and that the affinity of CL 218,872 was slightly increased supports the hypothesis that this amino acid is essential for a selective interaction at alpha 5beta 3gamma 2 receptors. We hypothesized that if Ile215 is essential for ligand selectivity at alpha 5beta 3gamma 2 receptors, then substitution of this residue at this corresponding position in alpha 1beta 3gamma 2 receptors (i.e., at Val211) should produce a significant increase in the affinity of compounds such as RY-80. Consistent with this hypothesis, the affinities of both RY-80 and RY-24 were increased ~20-fold in alpha 1V211Ibeta 3gamma 2, whereas the affinities of other ligands were either unchanged or slightly reduced (Fig. 4).


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Fig. 4.   Increased affinities of alpha 5-selective ligands at alpha 1V211Ibeta 3gamma 2 receptor. A, binding of [3H] RY-80 to wild-type alpha 1beta 3gamma 2 () and alpha 1V211Ibeta 3gamma 2 (open circle ) receptors. These are representative isotherms with KD values for [3H] RY-80 of 48.4 nM (Bmax = 353 fmol/mg of protein) and 2.3 nM (Bmax = 1453 fmol/mg of protein) for the alpha 1beta 3gamma 2 and alpha 1V211Ibeta 3gamma 2 receptors, respectively. Because of differences in receptor density and/or transfection efficiency the quantity of bound [3H]RY-80 was normalized to the estimated Bmax values. KD and Bmax values were calculated by nonlinear least-squares fit of specifically bound [3H]RY-80 (under Materials and Methods). B, displacement of [3H]Ro 15-1788 binding with RY-24 from wild-type alpha 1beta 3gamma 2 () and alpha 1V211Ibeta 3gamma 2 (open circle ) receptors. [3H]Ro 15-1788 was used at concentrations equal to its KD value at each receptor. Ki values were calculated using the equation of Cheng and Prusoff (under Materials and Methods). Ki values for RY-24 were equal to 55.9 and 3.3 nM for alpha 1beta 3gamma 2 and alpha 1V211Ibeta 3gamma 2 receptors, respectively. Representative curves are shown. Also shown are representative [3H]Ro 15-1788 saturation isotherms for wild-type alpha 1beta 3gamma 2 (black-triangle) and alpha 1V211Ibeta 3gamma 2 (triangle ) receptors. KD values for [3H]Ro 15-1788 were 1.2 and 0.82 nM in wild-type and mutant receptors, respectively. The data from [3H]Ro 15-1788 saturation isotherms were transformed as (1 - B/Bmax) × 100% for ease of comparison.

Based on the affinities of a structurally diverse group of ligands, an inclusive pharmacophore of the alpha 5beta 2gamma 2 receptor has been developed (Liu et al., 1996). A large lipophilic regionl (L2) appears to contribute to the unique pharmacological properties of this GABAA receptor isoform (Liu et al., 1996). Thus, although the L2 descriptor is common to the pharmacophore of other GABAA receptors (e.g., alpha 1beta 2gamma 2 receptors), the larger volume of L2 in alpha 5beta 2gamma 2 receptors has been proposed to result in low affinities for ligands (e.g., zolipidem) that do not extend into this domain, and very high affinities for compounds (e.g., RY-80) capable of filling this area (Liu et al., 1996). Both the >10-fold reduction in the affinities of alpha 5-selective ligands produced by a subtle change in the lipophilicity of residue 215 (i.e., isoleucine-to-valine) and the corresponding increases in affinity produced by the cognate (i.e., "back") mutation in alpha 1beta 3gamma 2 receptors prompted us to hypothesize that Ile215 constitutes a portion of this L2 domain. If this hypothesis is correct, then increasing the lipophilicity of the residue at alpha 5215 should increase the affinities of ligands such as RY-80 and RY-24 without remarkably affecting the affinities of nonselective ligands. Conversely, reducing lipophilicity, either by substituting a nonpolar amino acid with a smaller side chain or introduction of polar or charged residues at alpha 5215 should produce a further reduction in the affinities of these compounds. Increasing the lipophilicity of this residue (e.g., leucine, phenylalanine) did not remarkably affect the affinities of RY-80 and RY-24. In contrast, 5- to 6-fold decreases in affinities of nonspecific ligands Ro 15-1788 and flunitrazepam were observed (Table 1). However, neither reducing lipophilicity by introducing an alanine residue nor substitution of polar and/or charged residues (e.g., threonine, lysine, and aspartic acid) decreased the affinities of the alpha 5-selective ligands beyond that produced by the original alpha 5I215V mutation (Table 1). These observations indicate that although contributing to the high affinity and selectivity of RY-80 and RY-24 at alpha 5beta 3gamma 2 receptors, residue 215 may not directly participate in the formation of L2. Thus, the original model, based on an L2 lipophilic region exerting influence over ligand selectivity at alpha 5-containing GABAA receptors merits reconsideration. Furthermore, in the absence of crystallographic studies of ligand-bound receptor (Dingledine et al., 1999), it is possible that alpha 5215 modulates the affinities of RY-24 and RY-80 through an allosteric mechanism rather than as an integral part of the binding pocket.

Although the present findings demonstrate that alpha 5Ile215 substantially contributes to ligand selectivity at alpha 5beta 3gamma 2 receptors, it cannot be the sole determinant of the unique pharmacological profile of this receptor isoform. Thus, RY-80 and RY-24 retain modest selectivities (~8-14-fold) for alpha 5I215V, alpha 5I215A, and alpha 5I215Tbeta 3gamma 2 receptors compared with alpha 1beta 3gamma 2 receptors. Moreover, despite a ~20-fold increase in the affinities of RY-80 and RY-24 for alpha 1beta 3gamma 2 receptors containing a back mutation (i.e., alpha 1V211Ibeta 3gamma 2), these compounds remain significantly (~5-fold) more potent in wild-type alpha 5beta 3gamma 2 receptors. Finally, the very low affinity of zolpidem at wild-type alpha 5-containing receptors is maintained through a range of mutations at this residue. Other likely candidates contributing to the pharmacological profile of alpha 5beta 3gamma 2 receptors (i.e., selectivity for RY-80 and RY-24) are one or more of the other N terminus amino acid residues that differ between the alpha 5 and alpha 1-3 subunits, as well as residues on the gamma -subunit that may act in concert with alpha 5I215 to produce a unique pharmacology. This latter hypothesis is consistent with both the dramatic reduction in the affinity of zolpidem produced by substitution of a gamma 3 for a gamma 2 subunit in recombinant alpha 1-containing GABAA receptors (Lüddens et al., 1994), and the absolute requirement for a gamma -subunit for high-affinity binding of benzodiazepine-site ligands (Pritchett et al., 1989; Wong et al., 1992; Boileau et al., 1998).

The gamma -subunit has been closely linked to the efficacy of benzodiazepine-site ligands (Knoflach et al., 1991; Puia et al., 1991). Nonetheless, a series of conservative mutations (alpha 1H101R, alpha 2H101R, alpha 3H126R, and alpha 5H105R) that imparts diazepam insensitivity to the corresponding alpha xbeta 2/3gamma 2 receptors (Wieland et al., 1992; Benson et al., 1998) were recently shown to affect the efficacy of several benzodiazepine-site ligands (Benson et al., 1998). This finding prompted us to examine the role of alpha 5215 in controlling ligand efficacy at recombinant alpha 5beta 3gamma 2 receptors. Three mutations (alpha 5I215V, alpha 5I215T, and alpha 5I215K) were chosen for study based on their structural divergence from the residue present in wild-type receptors and the reduced affinities of alpha 5-selective agents. Introduction of valine, lysine, or threonine in position alpha 5215 does not affect the potency of GABA compared with wild-type receptors. These mutations did not alter the ability of flunitrazepam to act as an agonist, increasing currents evoked by subsaturating concentrations of GABA (Fig. 5; Table 2). In contrast, the characteristic ability of RY-80 and RY-24 to reduce GABA-gated currents in wild-type alpha 5beta 3gamma 2 receptors (Fig. 5; Table 2; Liu et al., 1996)) was abolished in alpha 5I215Vbeta 3gamma 2 and alpha 5I215Tbeta 3gamma 2 receptors, but retained in the alpha 5I215Kbeta 3gamma 2 mutants. The failure to observe a change in the efficacies of RY-24 and RY-80 in the alpha 5I215K mutants indicates this effect on ligand efficacy is independent of changes in ligand affinity because all three mutations reduced (albeit to different degrees) the affinities of these alpha 5-selective ligands. These data demonstrate that in addition to a well described role in defining the affinities of benzodiazepine-site ligands, the alpha -subunit can also impact ligand efficacy. The identification of amino acid residues contributing to ligand selectivity at GABAA receptor isoforms may provide insights resulting in compounds with a more limited spectrum of action than traditional 1,4-benzodiazepines.


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Fig. 5.   Representative voltage-clamp trace recordings from X. laevis oocytes injected with the wild-type or mutant alpha 5beta 3gamma 2 constructs alpha 5beta 3gamma 2 (left), alpha 5I215Vbeta 3gamma 2 (center), and alpha 5I215Kbeta 3gamma 2 (right). GABA (30 µM) was perfused over oocyte for the duration indicated by the black bar. GABA plus saturating concentrations of compound (1 µM) were perfused over oocyte for the duration indicated by the gray bar. Oocytes were voltage-clamped at -60 mV. Scale bars, 50 nA/10 s. Note that flunitrazepam potentiates currents at all receptor subtypes tested, whereas RY-80 changes its mode of action from being an inverse agonist at the wild-type alpha 5beta 3gamma 2 and mutant alpha 5I215Kbeta 3gamma 2 receptors to being an antagonist at the alpha 5I215Vbeta 3gamma 2 receptor.

    Footnotes

Received December 23, 1999; Accepted September 8, 2000

1 Current address: Thermogen, Inc., 2225 W. Harrison Street, Chicago, IL 60521.

Send reprint requests to: Dr. Marina I. Strakhova, Neuroscience Discovery Research, Lilly Research Laboratories, Drop code 0510, Lilly Corporate Center, Indianapolis, IN 46285. E-mail: strakhova_marina{at}lilly.com

    Abbreviations

GABA, gamma -aminobutyric acid; DS, diazepam sensitive.

    References
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Abstract
Introduction
Materials and Methods
Results
Discussion
References